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molpopgen / fwdpy11_statistical_tests

Suite of statistical tests for fwdpy11.
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Warning being issued #15

Closed molpopgen closed 2 years ago

molpopgen commented 2 years ago 
Adding results.png (0.041 MB).
Command convert not in $PATH. Install imagemagick in order to have embedded images and pdfs in the report.
Adding results.png (0.041 MB).
Command convert not in $PATH. Install imagemagick in order to have embedded images and pdfs in the report.
Adding results.png (0.041 MB).
Command convert not in $PATH. Install imagemagick in order to have embedded images and pdfs in the report.
Adding results.png (0.04 MB).
Command convert not in $PATH. Install imagemagick in order to have embedded images and pdfs in the report.
Downloading resources and rendering HTML.

But, imagemagick is in the Dockerfile???

molpopgen commented 2 years ago

The issue is that snakemake checks for the magick command and not for convert. The former is not installed on Ubuntu systems. I am trying to track down how one can install it.