Fixes some issues with the ligand not centering properly when performing docking. Also switches to grabbing protein from the pdb, rather than BioJava to get more detail on the file for more accurate display and docking.
Checklist
[ ] Code compiles correctly
[ ] Created tests which fail without the change (if possible)
[ ] All tests passing
[ ] Extended the README / documentation, if necessary
Description
Fixes some issues with the ligand not centering properly when performing docking. Also switches to grabbing protein from the pdb, rather than BioJava to get more detail on the file for more accurate display and docking.
Checklist