monadius
commented
3 years ago Hi @jperales,
You can download the model from my Google drive: https://drive.google.com/file/d/16GkWGhmzLat0PTX31_qLtpyP3q9l5LRg/view?usp=sharing
The archive contains a complete SPARK distribution and the model itself (in the folder CirrhosisModel). You may try the SPARK distribution from the archive to run the model:
1) Install JDK if you don't have it (I recommend OpenJDK 8 or 11 from https://adoptopenjdk.net/releases.html)
2) Run SPARK Manager.jar (double click it or type in the command line java -jar "SPARK Manager.jar").
3) Go to Options -> Options. Set paths to spark-core.jar and spark-external.jar (open file selection dialogs and select corresponding files lib/spark-core.jar and lib/spark-external.jar).
4) Select File -> Open and open CirrhosisModel/CirrhosisModel.xml.
5) Now click "Run in SPARK" to run the model. Click "Start" when the model is loaded.
Another option is to use the latest SPARK distribution.
1) Follow installation steps from https://github.com/monadius/spark-abm#how-to-run
2) Run SPARK_Manager.jar and open the model (from CirrhosisModel/CirrhosisModel.xml).
3) Now click "Start" to run the model. It will recompile the model and open it in SPARK. Click "Start" when the model is loaded.
Let me know if you get any problems with SPARK.
Best, Alexey
Dear @monadius , I am fascinated with your publication "A multiscale agent-based in silico model of liver fibrosis progression" (2014), and the model presented in that publication. I wonder where I could find the model. Unfortunately the original link to download the model is broken (http://www.pitt.edu/~cirm/spark/models/LFABM.zip), and if I didn't miss it, the current version of spark does not include it among the samples (models). Could you please share with me the original model or any other new version of LFABM?
Thank you very much Best, Javier