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monarch-initiative / PhenoteFX

PhenoteFX
https://monarch-initiative.github.io/PhenoteFX/
BSD 3-Clause "New" or "Revised" License
5 stars 1 forks source link

Window to help with obsoleted terms #48

Closed pnrobinson closed 5 years ago

pnrobinson commented 5 years ago

Consider adding a feature that will help to revise annotations if we obsolete a term in the HPO.

kingmanzhang commented 5 years ago

Peter，could you check whether you like the common disease branch？ I think we should merge in before making more changes.

On Sat, Dec 22, 2018 at 5:38 AM Peter Robinson notifications@github.com wrote:

Consider adding a feature that will help to revise annotations if we obsolete a term in the HPO.

  • Show a list of diseases with the obsoleted term
  • Allow the user to "update" the annotations (Note -- this should almost always be done with manual inspection, and so we should allow something like a todo list. It should be done with manual inspection, because if we are obsoleting a term, then probably there was something suboptimal about the annotations as well!)
  • The tool should create a list of all diseases that have an annotation to the obsolete term.
  • The curator should then be able to open up the files for each of the diseases, reannotate them as usual, and then close the issue.

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pnrobinson commented 5 years ago

This is now working