monarch-initiative / biolink-api

API for linked biological knowledge
https://api.monarchinitiative.org/api/
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Add disease to GO linkages #177

Open cmungall opened 6 years ago

cmungall commented 6 years ago

Currently we have curated links in MONDO between disease and GO; generally conservative and "obvious". E.g.

id: MONDO:0019053
name: peroxisomal disease
...
relationship: disease_has_basis_in_disruption_of GO:0005777  ! peroxisome

These are queryable via SciGraph

e.g.

https://scigraph-ontology.monarchinitiative.org/scigraph/graph/neighbors/MONDO%3A0019053?depth=1&blankNodes=false&direction=BOTH&entail=false

but entailment isn't used. i.e Zellweger syndrome type 1 does not have a direct link, it's inherited

image

we should provide a route in biolink that does the expected thing