monarch-initiative / biolink-api

API for linked biological knowledge
https://api.monarchinitiative.org/api/
BSD 3-Clause "New" or "Revised" License
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Add mart route for fetching all entities of a given type for a species #202

Open cmungall opened 6 years ago

cmungall commented 6 years ago

E.g. /all/gene/NCBITaxon:9606

This would not include all associations for each entity, just the core entities with synonyms, xrefs/equivs, etc

The implementation would use the in_taxon object. We would constrain to leaf taxon IDs to prevent massive downloads.

For entities such as diseases, anatomical structures, GO classes, we would use taxon constraints - focus on this in 2nd pass...