monarch-initiative / biolink-api

API for linked biological knowledge
https://api.monarchinitiative.org/api/
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autocomplete returns a funny GO idea #282

Open nathandunn opened 5 years ago

nathandunn commented 5 years ago

http://api.geneontology.org/api/search/entity/autocomplete/GO:0070996?rows=20&prefix=GO

image

{"docs": [{"id": "GO:0070996", "label": ["type 1 melanocortin receptor binding"], "match": "GO:0070996", "category": ["molecular function"], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO:0070996</em>", "has_highlight": true}, {"id": "GO:0070966", "label": ["nuclear-transcribed mRNA catabolic process, no-go decay"], "match": "GO:0070966", "category": ["cellular process", "biological process"], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0070966", "has_highlight": true}, {"id": "GO:0019861PHENOTYPE", "label": ["obsolete flagellum (obsolete GO:0019861) phenotype"], "match": "GO:0019861PHENOTYPE", "category": [], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0019861PHENOTYPE", "has_highlight": true}, {"id": "GO:0014731PHENOTYPE", "label": ["spectrin-associated cytoskeleton phenotype"], "match": "GO:0014731PHENOTYPE", "category": [], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0014731PHENOTYPE", "has_highlight": true}, {"id": "GO:0005623PHENOTYPE", "label": ["cell phenotype"], "match": "GO:0005623PHENOTYPE", "category": [], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0005623PHENOTYPE", "has_highlight": true}, {"id": "GO:0031948", "label": ["positive regulation of glucocorticoid biosynthetic process"], "match": "GO:0031948", "category": ["biological process"], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0031948", "has_highlight": true}, {"id": "GO:0031949", "label": ["regulation of glucocorticoid catabolic process"], "match": "GO:0031949", "category": ["biological process"], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0031949", "has_highlight": true}, {"id": "GO:0003015PHENOTYPE", "label": ["heart process phenotype"], "match": "GO:0003015PHENOTYPE", "category": ["phenotype", "quality"], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0003015PHENOTYPE", "has_highlight": true}, {"id": "GO:0031940", "label": ["positive regulation of chromatin silencing at telomere"], "match": "GO:0031940", "category": ["biological process"], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0031940", "has_highlight": true}, {"id": "GO:0031942", "label": ["i-AAA complex"], "match": "GO:0031942", "category": ["cellular component"], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0031942", "has_highlight": true}, {"id": "GO:0031945", "label": ["positive regulation of glucocorticoid metabolic process"], "match": "GO:0031945", "category": ["biological process"], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0031945", "has_highlight": true}, {"id": "GO:0034654PHENOTYPE", "label": ["nucleobase-containing compound biosynthetic process phenotype"], "match": "GO:0034654PHENOTYPE", "category": ["phenotype", "quality"], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0034654PHENOTYPE", "has_highlight": true}, {"id": "GO:0000028", "label": ["ribosomal small subunit assembly"], "match": "GO:0000028", "category": ["cellular process", "biological process"], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0000028", "has_highlight": true}, {"id": "GO:0000096", "label": ["sulfur amino acid metabolic process"], "match": "GO:0000096", "category": ["cellular process", "biological process"], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0000096", "has_highlight": true}, {"id": "GO:0031937", "label": ["positive regulation of chromatin silencing"], "match": "GO:0031937", "category": ["biological process"], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0031937", "has_highlight": true}, {"id": "GO:0031936", "label": ["negative regulation of chromatin silencing"], "match": "GO:0031936", "category": ["biological process"], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0031936", "has_highlight": true}, {"id": "GO:0031939", "label": ["negative regulation of chromatin silencing at telomere"], "match": "GO:0031939", "category": ["biological process"], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0031939", "has_highlight": true}, {"id": "GO:0031938", "label": ["regulation of chromatin silencing at telomere"], "match": "GO:0031938", "category": ["biological process"], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0031938", "has_highlight": true}, {"id": "GO:0031930", "label": ["mitochondria-nucleus signaling pathway"], "match": "GO:0031930", "category": ["cellular process", "biological process"], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0031930", "has_highlight": true}, {"id": "GO:0031935", "label": ["regulation of chromatin silencing"], "match": "GO:0031935", "category": ["biological process"], "taxon": "", "taxon_label": "", "highlight": "<em class=\"hilite\">GO</em>:0031935", "has_highlight": true}]}

Sometimes the go:id is ``GO:PHENOTYPE``` if that is intentional, then please close this.

deepakunni3 commented 5 years ago

It may be possible that the GO version of BioLink API is actually configured to query Monarch Solr for autocomplete search.

Ideally it should be configured to query AmiGO Solr (GOlr).

@lpalbou @kltm