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monarch-initiative / curate-gpt

LLM-driven curation assist tool (pre-alpha)
https://monarch-initiative.github.io/curate-gpt/
BSD 3-Clause "New" or "Revised" License
49 stars 11 forks source link

switch to using linkml-store #37

Open cmungall opened 3 months ago

cmungall commented 3 months ago

See https://github.com/linkml/linkml-store

This would swap out the abstraction layer here https://github.com/monarch-initiative/curate-gpt/tree/main/src/curate_gpt/store

Note that no chromadb adapter is required - it's sufficient to use the default duckdb adapter (fast) and the llm lib. See https://linkml.io/linkml-store/examples/Semantic-Search.html