monarch-initiative / dipper

Data Ingestion Pipeline for Monarch

https://dipper.readthedocs.io/en/latest/

BSD 3-Clause "New" or "Revised" License

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IMPC #1008

Closed TomConlin closed 3 years ago

TomConlin commented 3 years ago

revert / adapt to a few instabilities

IMPC

They brought back the "/latest/" dir as a link to the latest release so it need not be hardcoded
- They stopped pointlessly tar-ing a single file into an archive before gzipping it
- They decided to not provide .md5 files instead of .md5 files dependent on replicating their entire file system structure.

the latest data file had a new statistical method for the translation table.

Curie map:

added a mapping for the NCBI BookShelf which use downstream
better prefix ideas welcome

Clinvar subset extract script

update to accept the ClinVarVariant: IDs which did not exist when it was first written.