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monarch-initiative / dipper

Data Ingestion Pipeline for Monarch
https://dipper.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Gene - Variant mixups in mouse data #519

Open kshefchek opened 7 years ago

kshefchek commented 7 years ago

On both production and beta we have nodes categorized as both genes and variants, for example:

https://scigraph-data.monarchinitiative.org/scigraph/graph/neighbors?id=MGI%3A3811864&depth=1&blankNodes=false&relationshipType=sameAs&direction=BOTH&entail=false&project=*

which comes from mgi.ttl: http://www.informatics.jax.org/allele/MGI:3811865 owl:sameAs http://www.informatics.jax.org/marker/MGI:3811864

Is this accurate? cc @mbrush

kshefchek commented 4 years ago

@cmungall 's suggestion on 8/20/20 data call - remove equivalence and use a GENO relation to link these two entities