monarch-initiative / dipper

Data Ingestion Pipeline for Monarch
https://dipper.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Update gene to OMIMPS relationship #821

Closed kshefchek closed 5 years ago

kshefchek commented 5 years ago

Our OMIM ingest is too indiscriminate in making subClassOf triples to OMIM phenotypic series identifiers. Proposing we check the type of the ID and make a 'contributes to disease' triple for genes, and subClassOf for diseases. Does the association between gene and OMIMPS make sense? We could also infer them.

See https://github.com/monarch-initiative/dipper/pull/783, https://github.com/monarch-initiative/dipper/issues/782

Closes #820

@TomConlin @justaddcoffee maybe it's easier to include this in one of your PRs?