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monarch-initiative / dipper

Data Ingestion Pipeline for Monarch
https://dipper.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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clinvar turtle is using incorrect xref property #822

Closed cmungall closed 5 years ago

cmungall commented 5 years ago

ttle has triples like:

http://www.ncbi.nlm.nih.gov/clinvar/variation/137029    oio:hasdbxref   http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=76764016

the correct URI is oio:hasDbXref (URIs are case sensitive)

Also: this is not a good semantic web URI. Use id.org instead?

kshefchek commented 5 years ago

hasDbXref is fixed in https://archive.monarchinitiative.org/201909//ttl/clinvar.nt via https://github.com/monarch-initiative/dipper/pull/819

kshefchek commented 5 years ago

fixed in latest release and the old clinvar.ttl has been removed from data.monarch, we are using ntriples for this source now.