monarch-initiative / dipper

Data Ingestion Pipeline for Monarch
https://dipper.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Missing is_allele_of associations in ZFIN ingest #872

Open kshefchek opened 4 years ago

kshefchek commented 4 years ago

I've been working on our gene-variant display and am auditing our data. In doing this I found that we're missing two allele-gene relationships for shha. According to the ZFIN and AGR sites shha has 6 alleles, we're missing:

https://zfin.org/ZDB-ALT-010427-6 https://zfin.org/ZDB-ALT-010427-8

In both cases we're linking the gene to a blank node connected to these, but I think we should have the edge connected to both, or just to the non-blank node version. The behavior is inconsistent here since we're getting the other four.