Ultimately about further reducing errors in the Jenkins pipeline logs.
Turns out dbxrefs were yet another source of these errors and finding them
to fix meant first improving out logging behaviour a little bit.
A side effect is we now have access to all the command line arguments in all the ingests
so some of the hoops we now jump through should just go away instead of continuing to grow stale and increasing in number.
(edit)
Added a number of log file reducing commits
so there is less boilerplate on expected/known behaviour
Ultimately about further reducing errors in the Jenkins pipeline logs. Turns out dbxrefs were yet another source of these errors and finding them to fix meant first improving out logging behaviour a little bit.
A side effect is we now have access to all the command line arguments in all the ingests so some of the hoops we now jump through should just go away instead of continuing to grow stale and increasing in number.
(edit) Added a number of log file reducing commits so there is less boilerplate on expected/known behaviour