Note of obsoletion: PHENOTYPE IRIs

monarch-initiative / dipper

Data Ingestion Pipeline for Monarch

https://dipper.readthedocs.io/en/latest/

BSD 3-Clause "New" or "Revised" License

56 stars 26 forks source link

Note of obsoletion: PHENOTYPE IRIs #909

Open matentzn opened 4 years ago

matentzn commented 4 years ago

The following IRIs will not be supported by uPheno anymore:

https://github.com/obophenotype/upheno-dev/blob/master/src/curation/qc/required_allele_phenotype.txt https://github.com/obophenotype/upheno-dev/blob/master/src/curation/qc/required_other_classes.txt

If anyone cares about them, they should let me know.

TomConlin commented 4 years ago

Does this leave the thousands of remaining PHENOTYPE IRIs not on this list supported?

matentzn commented 4 years ago

Yes, but properly. I will work with flybase to get them to support a proper phenotype module for their anatomy ontology, which gets rid of the FBBT*PHENOTYPE terms. I will also support all GO phenotype terms directly from uPheno.

matentzn commented 4 years ago

The goal is to not have a single IRI ending with PHENOTYPE