ClinVar: two Monarch associations are missing OBAN:association_has_predicate - Githubissues

monarch-initiative / dipper

Data Ingestion Pipeline for Monarch

https://dipper.readthedocs.io/en/latest/

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ClinVar: two Monarch associations are missing OBAN:association_has_predicate #963

Open TomConlin opened 3 years ago

TomConlin commented 3 years ago

MONARCH|bbde782a8f9ecffafa1f|rdf|type|OBAN|association MONARCH|bbde782a8f9ecffafa1f|SEPIO|0000015|BNODE|b9b7ce213aedc167a8d1 MONARCH|bbde782a8f9ecffafa1f|OBAN|association_has_subject|ClinVarVariant|88639
MONARCH|bbde782a8f9ecffafa1f|OBAN|association_has_object|OMIM|608516 MONARCH|bbde782a8f9ecffafa1f|SEPIO|0000007|BNODE| be5743009077a95dd715 MONARCH|bbde782a8f9ecffafa1f|SEPIO|0000168| LITERAL| 0

MONARCH|bf4652956c21bb3ccfe4|rdf|type|OBAN| association MONARCH|bf4652956c21bb3ccfe4|SEPIO|0000168| LITERAL|0 MONARCH|bf4652956c21bb3ccfe4 |OBAN|association_has_object|OMIM|608516 MONARCH|bf4652956c21bb3ccfe4 |OBAN|association_has_subject|ClinVarVariant|88640| MONARCH|bf4652956c21bb3ccfe4 |SEPIO|0000007|BNODE|b067af3b72190f23dc61 MONARCH|bf4652956c21bb3ccfe4 |SEPIO|0000015|BNODE|bd5d2ada782c6538bc23

(that is 2 out of 13.5M Monarch Associations)