monarch-initiative / dipper

Data Ingestion Pipeline for Monarch
https://dipper.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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disease phenotype clique merging #987

Open kshefchek opened 4 years ago

kshefchek commented 4 years ago

for example see https://monarchinitiative.org/phenotype/HP:0000023

this is likely not a dipper bug but triaging here until we can investigate further

credit to @iimpulse for finding this

kshefchek commented 4 years ago

note that this is a monarch rule, but we don't yet feed this back to the mondo/ontology teams. This clique merge bug appears to be fixed on beta (september release), but there are more:

[

{
    "disease": "http://purl.obolibrary.org/obo/HP_0410151"
},
{
    "disease": "http://purl.obolibrary.org/obo/MONDO_0000129"
},
{
    "disease": "http://purl.obolibrary.org/obo/MONDO_0022394"
},
{
    "disease": "http://purl.obolibrary.org/obo/MONDO_0022901"
},
{
    "disease": "http://purl.obolibrary.org/obo/MONDO_0005361"
},
{
    "disease": "http://purl.obolibrary.org/obo/MONDO_0012451"
},
{
    "disease": "http://purl.obolibrary.org/obo/MONDO_0013260"
},
{
    "disease": "http://purl.obolibrary.org/obo/MONDO_0000495"
},
{
    "disease": "http://purl.obolibrary.org/obo/MONDO_0001832"
},
{
    "disease": "http://purl.obolibrary.org/obo/MONDO_0001649"
}

]