Currently we represent variant effects as a strs in the TranscriptAnnotation. However, it would simplify the things down the line if we used VariantEffect enum members instead.
We need to require VariantEffects in TranscriptAnnotation and we should update all genophenocorr.preprocessing.FunctionalAnnotator implementations accordingly.
Definition of done
VariantEffect enum is moved to the genophenocorr.model package
Currently we represent variant effects as a
strs in theTranscriptAnnotation. However, it would simplify the things down the line if we usedVariantEffectenum members instead.We need to require
VariantEffects inTranscriptAnnotationand we should update allgenophenocorr.preprocessing.FunctionalAnnotatorimplementations accordingly.Definition of done
VariantEffectenum is moved to thegenophenocorr.modelpackageVariantEffectinTranscriptAnnotationFunctionalAnnotatorimplementations