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monarch-initiative / genophenocorr

Genotype Phenotype Correlation
https://monarch-initiative.github.io/genophenocorr/stable
MIT License
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as_string() does not exist #81

Closed pnrobinson closed 8 months ago

pnrobinson commented 8 months ago

which means that this lin in _vep.py is throwing an additional error

self._logging.error(f"Expected a result but got an Error for variant: {variant_coordinates.as_string()}")

VariantCoordinates has a str method, which means we can write simply

self._logging.error(f"Expected a result but got an Error for variant: {variant_coordinates}")
pnrobinson commented 8 months ago

Fixed by https://github.com/monarch-initiative/genophenocorr/pull/82

pnrobinson commented 8 months ago

fixed