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monarch-initiative
/
gpsea
A Python library for discovery of genotype-phenotype associations
https://monarch-initiative.github.io/gpsea/stable
MIT License
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A possible bug in release 0.7
#339
pnrobinson
opened
4 hours ago
0
Release `0.7.0`
#338
ielis
closed
22 hours ago
0
Fix Q/C reporting
#337
ielis
closed
23 hours ago
0
Expose more analysis components
#336
ielis
closed
1 day ago
0
M/F analysis
#335
ielis
opened
2 days ago
0
Standardize metadata of the analysis components
#334
ielis
closed
2 days ago
0
groups predicate
#333
pnrobinson
closed
5 days ago
1
Show how to plot Kaplan-Meier curves
#332
ielis
closed
6 days ago
0
Generalize analysis results
#331
ielis
closed
6 days ago
0
Improve docs for the `VariantPredicates.region` predicate
#330
ielis
closed
1 week ago
0
Simplify the variant predicates that target protein features
#329
ielis
closed
1 week ago
0
Counting male and female individuals for CohortViewer
#328
pnrobinson
closed
2 days ago
5
Errors not shown in ABCB7 cohort
#327
pnrobinson
closed
23 hours ago
0
Create a predicate to test if variant affects a codon that encodes an aminoacid of interest
#326
ielis
opened
1 week ago
0
Use ancestors to implement HPO phenotype predicate
#325
ielis
closed
1 week ago
0
Make release `0.6.0`
#324
ielis
closed
1 week ago
0
Refactor `gpsea.view` package elements
#323
ielis
closed
1 week ago
0
Ask for the predicate group labels individually
#322
ielis
closed
1 week ago
0
Revise Survival analysis user guide section
#321
ielis
opened
1 week ago
0
Add survival analyses
#320
ielis
closed
1 week ago
0
Minor issue and bug fixes
#319
ielis
closed
2 weeks ago
0
prepare_predicates_for_terms_of_interest
#318
pnrobinson
closed
2 weeks ago
0
[mono|bi]allelic_predicate function signature
#317
pnrobinson
closed
1 week ago
1
No HPO but has >0 measurement or > disease
#316
pnrobinson
closed
2 weeks ago
0
add documentation about how to show all variants to the rtd
#315
pnrobinson
opened
2 weeks ago
0
VariantTranscriptVisualizer
#314
pnrobinson
opened
2 weeks ago
0
Typo
#313
pnrobinson
closed
2 weeks ago
0
default arguments for MTC filter
#312
pnrobinson
closed
2 weeks ago
1
box plot for t test
#311
pnrobinson
closed
2 weeks ago
1
Sort variant effects table and report percentages
#310
pnrobinson
closed
1 week ago
0
Sanitize `SpecifyTermsMtcFilter` input
#309
ielis
closed
2 weeks ago
0
Fix bug in Specify terms MTC filter
#308
ielis
closed
2 weeks ago
2
Simplify the mode of inheritance predicates
#307
ielis
closed
1 week ago
0
ProteinPredicates
#306
pnrobinson
closed
1 week ago
2
Improve AR predicate defaults
#305
ielis
closed
1 week ago
0
Make release `0.5.0`
#304
ielis
closed
3 weeks ago
0
The `nan` phenotype scores will be ignored
#303
ielis
closed
3 weeks ago
0
Update tests to reflect the genotype category label changes
#302
ielis
closed
3 weeks ago
0
Need to add more protein features to ProteinMetadata
#301
pnrobinson
opened
3 weeks ago
2
Added exons to variant viewer
#300
lnrekerle
closed
3 weeks ago
0
Allow to filter on annotation frequency
#299
pnrobinson
closed
3 weeks ago
0
Remove notebooks
#298
pnrobinson
closed
3 weeks ago
1
Found bug if there are no protein features.
#297
lnrekerle
closed
3 weeks ago
0
Fix `nan` p value in measurements analysis
#296
ielis
closed
3 weeks ago
0
Revise Measurements user guide
#295
ielis
opened
3 weeks ago
0
Allow merging `Cohort`s
#294
ielis
opened
4 weeks ago
2
Simplify the AR and biallelic predicates
#293
ielis
closed
4 weeks ago
0
adding improvements to protein variant table and adding documentation.
#292
pnrobinson
closed
3 weeks ago
2
Promoter variants
#291
pnrobinson
closed
2 weeks ago
3
Revise De Vries score
#290
ielis
opened
1 month ago
0
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