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monarch-initiative
/
gpsea
A Python library for discovery of genotype-phenotype associations
https://monarch-initiative.github.io/gpsea/stable
MIT License
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vital status not being picked up correctly
#363
pnrobinson
opened
16 hours ago
0
Issue with recognizing Zinc finger
#362
pnrobinson
opened
1 day ago
0
Harmonize caching
#361
ielis
closed
4 days ago
0
updating documentation for CountingPhenotypeScorer
#360
pnrobinson
closed
13 hours ago
0
Adding TRANSMEMBRANE and TOPOLOGICAL DOMAIN to protein types
#359
pnrobinson
closed
13 hours ago
0
Disable dark mode
#358
ielis
opened
1 week ago
0
also return t statistic (not just the p value)
#357
pnrobinson
closed
5 days ago
1
gpsea.analysis.pscore.stats._stats.TTestStatistic
#356
pnrobinson
closed
5 days ago
2
Release
#355
ielis
closed
1 week ago
0
Revise reports
#354
ielis
closed
1 week ago
0
Report measurements in the cohort overview
#353
ielis
opened
1 week ago
0
Devries score update
#352
pnrobinson
closed
1 week ago
0
Simplify the HPO term analysis configuration
#351
ielis
closed
1 week ago
0
Parse onsets formatted as ontology terms
#350
ielis
closed
1 week ago
0
Include onset provided as an ontology term
#349
ielis
closed
1 week ago
0
Improve `index` and `setup` doc sections
#348
ielis
opened
2 weeks ago
0
Add convenience methods on `Cohort` and result items
#347
ielis
closed
2 weeks ago
0
adding zinc finger to ProteinFeatures
#346
pnrobinson
closed
1 week ago
4
Patient_5 has an error with variant SO:1000029_HGNC:12799_WWOX.
#345
pnrobinson
opened
2 weeks ago
2
"Zinc finger"
#344
pnrobinson
closed
1 week ago
3
SIMPLIFICATION
#343
pnrobinson
closed
1 week ago
2
redundancy??
#342
pnrobinson
opened
2 weeks ago
1
SUOX cohort problem
#341
pnrobinson
opened
2 weeks ago
0
BRD4 cohort potential problem?
#340
pnrobinson
closed
1 week ago
1
A possible bug in release 0.7
#339
pnrobinson
closed
1 week ago
2
Release `0.7.0`
#338
ielis
closed
4 weeks ago
0
Fix Q/C reporting
#337
ielis
closed
4 weeks ago
0
Expose more analysis components
#336
ielis
closed
4 weeks ago
0
M/F analysis
#335
ielis
opened
4 weeks ago
0
Standardize metadata of the analysis components
#334
ielis
closed
4 weeks ago
0
groups predicate
#333
pnrobinson
closed
1 month ago
1
Show how to plot Kaplan-Meier curves
#332
ielis
closed
1 month ago
0
Generalize analysis results
#331
ielis
closed
1 month ago
0
Improve docs for the `VariantPredicates.region` predicate
#330
ielis
closed
1 month ago
0
Simplify the variant predicates that target protein features
#329
ielis
closed
1 month ago
0
Counting male and female individuals for CohortViewer
#328
pnrobinson
closed
4 weeks ago
5
Errors not shown in ABCB7 cohort
#327
pnrobinson
closed
4 weeks ago
0
Create a predicate to test if variant affects a codon that encodes an aminoacid of interest
#326
ielis
opened
1 month ago
2
Use ancestors to implement HPO phenotype predicate
#325
ielis
closed
1 month ago
0
Make release `0.6.0`
#324
ielis
closed
1 month ago
0
Refactor `gpsea.view` package elements
#323
ielis
closed
1 month ago
0
Ask for the predicate group labels individually
#322
ielis
closed
1 month ago
0
Revise Survival analysis user guide section
#321
ielis
opened
1 month ago
0
Add survival analyses
#320
ielis
closed
1 month ago
0
Minor issue and bug fixes
#319
ielis
closed
1 month ago
0
prepare_predicates_for_terms_of_interest
#318
pnrobinson
closed
1 month ago
0
[mono|bi]allelic_predicate function signature
#317
pnrobinson
closed
1 month ago
1
No HPO but has >0 measurement or > disease
#316
pnrobinson
closed
1 month ago
0
add documentation about how to show all variants to the rtd
#315
pnrobinson
opened
1 month ago
0
VariantTranscriptVisualizer
#314
pnrobinson
opened
1 month ago
0
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