Closed pnrobinson closed 1 month ago
I agree that it is not 100% easy to know how to use genophenocorr
and there is a decent number of imports.
I think we should exemplify the package in the Tutorial & User guide sections - the same way how Matplotlib, Pandas, and Scikit Learn are presented. However, since we are still developing the package, this is still WIP and I'll keep this issue open until we're done with explaining the docs.
So,
We improved the docs and the Tutorial as well as the User guide explain how to perform the analysis.
It is relatively difficult to figure out which modules to import. I wonder if we can define something like this
Then in the notebooks we would have only this
If we wanted extra control, we could define multiple such files for the variant use-cases, and the documentation would enable powerusers to import individual packages as needed.