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monarch-initiative / gpsea

A Python library for discovery of genotype-phenotype associations
https://monarch-initiative.github.io/gpsea/stable
MIT License
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Need to add more protein features to ProteinMetadata #301

Open pnrobinson opened 1 month ago

pnrobinson commented 1 month ago

Could not parse feature: Unrecognized protein feature type: "Topological domain" (skipping) Could not parse feature: Unrecognized protein feature type: "Transmembrane" (skipping)

Redo the SLC32A1 analysis after this is added.

pnrobinson commented 1 month ago

Unrecognized protein feature type: "Zinc finger" (skipping). ZN462

pnrobinson commented 1 month ago

Basic and acidic residues -- manual JSON is working but UnitProt API omits this label="NKX6-2", uniprot_json="Q9C056.json",

pnrobinson commented 1 week ago

This has been addressed with two PRs, including the latest: https://github.com/monarch-initiative/gpsea/pull/359