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The Monarch Initiative Helpdesk
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Obtaining example phenopackets #69

Closed LiNk-NY closed 1 year ago

LiNk-NY commented 1 year ago

Hi HelpDesk,

I am new to the project and I am working on an interface in the R language to import Phenopackets V2.

Is it possible to obtain example phenopackets (v2) for examples and testing?

Thank you for your help in advance! :pray:

Best regards, Marcel

sagehrke commented 1 year ago

Hi Marcel -- Thanks for reaching out! @pnrobinson shared this response to send to you: here are some examples in YAML and JSON format -- http://phenopackets.org/phenopacket-tools/examples

Please let us know if you have any further questions.

All the best, Sarah

LiNk-NY commented 1 year ago

Hi Sarah, @sagehrke

Thank you for your response!

The link you posted leads me to empty links, e.g., https://github.com/phenopackets/phenopacket-tools/tree/gh-pages/examples/phenopackets

I was hoping for something similar to https://zenodo.org/record/3905420 which is great for testing V1 code in R.

Thank you!

Best regards, Marcel

ielis commented 1 year ago

Hi @LiNk-NY, after performing the fix as described in the issue, the link to examples should work now. Thanks a lot for pointing this up and please let us know if you find any other issues.

All the best, Daniel