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monarch-initiative / hpoannotqc

HPO Annotation QC
http://hpo-annotation-qc.readthedocs.io/en/latest/#
MIT License
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Orpha XML parse error #63

Open pnrobinson opened 5 months ago

pnrobinson commented 5 months ago 
javax.xml.stream.XMLStreamException: ParseError at [row,col]:[3102,13]
Message: The element type "HPODisorderAssociation" must be terminated by the matching end-tag "</HPODisorderAssociation>".
    at java.xml/com.sun.org.apache.xerces.internal.impl.XMLStreamReaderImpl.next(XMLStreamReaderImpl.java:652)
    at java.xml/com.sun.xml.internal.stream.XMLEventReaderImpl.nextEvent(XMLEventReaderImpl.java:83)
    at org.monarchinitiative.hpoannotqc.annotations.OrphanetXML2HpoDiseaseModelParser.parse(OrphanetXML2HpoDiseaseModelParser.java:219)
    at org.monarchinitiative.hpoannotqc.annotations.OrphanetXML2HpoDiseaseModelParser.<init>(OrphanetXML2HpoDiseaseModelParser.java:150)
pnrobinson commented 5 months ago

This was do to an incomplete download of the XML file. It would be good to improve the error message.