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monarch-initiative / koza

Data transformation framework for LinkML data models
https://koza.monarchinitiative.org/
BSD 3-Clause "New" or "Revised" License
48 stars 4 forks source link

Add tar.gz compression support #79

Closed kevinschaper closed 2 years ago

kevinschaper commented 2 years ago

We should add support for uncompressing a tar.gz and (for now at least) ingesting all of the files inside.

This need comes from the Panther RefGenomeOrthologs.tar.gz file, which is actually just a single file within a tar gz (which is a little odd).

We could also consider whether it would instead make sense to have an option in kghub downloader to uncompress. Either would solve the problem, I think.