General QoL updates (WIP)

monarch-initiative / koza

Data transformation framework for LinkML data models

https://koza.monarchinitiative.org/

BSD 3-Clause "New" or "Revised" License

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Closed glass-ships closed 1 year ago

glass-ships commented 1 year ago

This PR includes a number of changes including:

Updates to the logging setup (now works when run in CLI or as imported module)
- would like to figure out how to capture koza log messages from monarch ingest logger if possible though
Updated biolink model and updated tests and examples to match changes
Lock LinkML validator to a previous version until a validation bug gets fixed

glass-ships commented 1 year ago

After this PR is merged, next steps: