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monarch-initiative / maxo-annotations

Annotations to terms of the Medical Action Ontology (MAxO)
https://monarch-initiative.github.io/maxo-annotations/
Creative Commons Attribution 4.0 International
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Release coordination with MAXO? #45

Open matentzn opened 1 year ago

matentzn commented 1 year ago

In HPO, we basically run the entire HPOA pipeline as part of every HPO release, and then releasing the HPOA files alongside the HPO release files. Was the plan not to do the same with MAXAN (Maxo Annotations), so we can use the MAXO versioning system with the annotations?

This would mean we need to somehow automate the process of obtaining the official mappings from POET, cc @iimpulse @pnrobinson

iimpulse commented 1 year ago

Yes there are 2 endpoints in POET. 1 to release the annotations (move approved annotations to official annotations), 2. Get the TSV output of official MAXAN.

matentzn commented 1 year ago

Great, thanks @iimpulse. Can you make a PR here:

https://github.com/monarch-initiative/MAxO/blob/master/src/ontology/maxo.Makefile

Similiar to what we do here: https://github.com/obophenotype/human-phenotype-ontology/blob/master/src/ontology/hp.Makefile#L445

That does the required processing?