Closed cmungall closed 6 years ago
OLS ticket filed at https://github.com/EBISPOT/OLS/issues/175 to investigate where the truncation occurs.
ORDO source file at http://www.orphadata.org/data/ORDO/ordo_orphanet.owl has truncated definition. We should file this at ORDO tracker if they have one?
@cmungall Orphanet doesn’t seem to have a tracker, but after a bit of digging in their “Contact us” web page (http://www.orpha.net/consor/cgi-bin/Directory_Contact.php?lng=EN), I’d suggest posting a message here http://www.orpha.net/consor/cgi-bin/Directory_Contact.php?lng=EN&type_list=CONTACT_FORM&StaticId=29, or a tweet (https://twitter.com/orphanet). Hope this helps.
@cmungall Actually, there is an @Orphanet ORDO tracker, but it seems to be empty: https://github.com/Orphanet/ORDO/issues
I think that it is best to go to the specific disease page on the orphoanet tracker, which can be reached by searching the disease name here: http://www.orpha.net/consor/cgi-bin/Disease.php?lng=EN
Dear all, It was an issue in the owl generating process for some definitions with specific typo. It has been solved in the current ORDO version. Should be automatically updated both in bioportal and OLS.
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I can conform this fixes it thanks Marc @Orphanet
I will close this when we have propagated changes
This issue was moved to monarch-initiative/mondo#155
E.g. https://www.ebi.ac.uk/ols/ontologies/ordo/terms?iri=http%3A%2F%2Fwww.orpha.net%2FORDO%2FOrphanet_199 has a text definition
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The def on the orpha site is fine: http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Expert=199
so looks like introduced when going from xml2owl?