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monarch-initiative / monarch-gene-mapping

Code for mapping source namespaces to preffered namespacing
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Add code to pull mapping from Alliance tsv instead of BGI #25

Closed amc-corey-cox closed 1 year ago

amc-corey-cox commented 1 year ago

Use GENECROSSREFERENCE_COMBINED.tsv.gz]

amc-corey-cox commented 1 year ago

The current code is producing a lot more mappings than our BGI method. I've likely missed something so I'm putting this into a draft for now. Please see issue #12 for more information.

putmantime commented 1 year ago

Exclude the UniProt mappings

amc-corey-cox commented 1 year ago

This needs some verification before we finish enabling it. Currently, the code is in to do all the pre-processing and field alignment for the mapping but I have commented out the lines that would add this to the mapping file. To use these mappings instead of the BGI mappings, we need to comment the BGI mappings and uncomment the last two lines of the new section. I could use some help in figuring out how to verify that things are right, or you can take it from here. I'd love to be part of it though, if you can schedule with me when you're working on it.