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monarch-initiative / monarch-gene-mapping

Code for mapping source namespaces to preffered namespacing
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Instead of obo_converter, use the SSSOM EPM directly #35

Closed matentzn closed 10 months ago

matentzn commented 10 months ago

For context see: https://github.com/monarch-initiative/monarch-gene-mapping/pull/34#discussion_r1416046747

pip install sssom
from sssom.context import get_converter
converter = get_converter()

@glass-ships does this work for you? This will use the correct complete and SSSOM aligned obo converter.

matentzn commented 10 months ago

The gene mappings are still not updated with jenkins I presume? What I get from data.mi.org is still empty.

glass-ships commented 10 months ago

correct. i'll run a jenkins job now to populate the missing fields.

glass-ships commented 10 months ago

The file should be updated and fixed now in data.mi.org