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monarch-initiative / monarch-gene-mapping

Code for mapping source namespaces to preffered namespacing
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Add ENSEMBL:ENSGAL to NCBI mapping #4

Closed kevinschaper closed 1 year ago

kevinschaper commented 1 year ago

We should be able to gain about 14k orthology edges from Panther by adding mapping from ENSEMBL:ENSGALG IDs to NCBI Gene IDs.

https://ftp.ncbi.nih.gov/gene/DATA/gene2ensembl.gz

kevinschaper commented 1 year ago

Outside this repo, you'll also need to add https://ftp.ncbi.nih.gov/gene/DATA/gene2ensembl.gz to downloads.yaml the monarch-ingest repo. (This runs as a part of that, so the code is here, but the download happens there...slightly awkward)