Closed kevinschaper closed 1 year ago
Outside this repo, you'll also need to add https://ftp.ncbi.nih.gov/gene/DATA/gene2ensembl.gz to downloads.yaml the monarch-ingest repo. (This runs as a part of that, so the code is here, but the download happens there...slightly awkward)
We should be able to gain about 14k orthology edges from Panther by adding mapping from ENSEMBL:ENSGALG IDs to NCBI Gene IDs.
https://ftp.ncbi.nih.gov/gene/DATA/gene2ensembl.gz