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monarch-initiative / monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza
https://monarchinitiative.org
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Update to latest biolink-model-pydantic & fix gene to pub associations #153

Closed kevinschaper closed 2 years ago

kevinschaper commented 2 years ago

I used Predicate.mentions for the gene to publication ingests, but they should use Predicate.mentioned_by

Affects:

kevinschaper commented 2 years ago

This association flipped between biolink versions, and so I think we're going to need to update the gene2pub ingests when we upgrade to the latest biolink model