monarch-initiative / monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza
https://monarchinitiative.org
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WIP Update Biolink Model Pydantic to latest #170

Closed glass-ships closed 2 years ago

glass-ships commented 2 years ago

This branch updates the dependency on biolink model pydantic to 0.1.4, in which NamedThingToInformationContentEntityAssociation was changed to InformationContentEntitytoNamedThingAssociation.

As such, all ingests and tests should be updated to import the correct class, as well as swapping subjects and objects.

For consistency, instances of gene_to_publication have been changed to publication_to_gene.

glass-ships commented 2 years ago

Nice find, thanks Kevin!