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monarch-initiative / monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza
https://monarchinitiative.org
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Transform KGX file to Neo4J data dump #183

Closed putmantime closed 2 years ago

putmantime commented 2 years ago

KGX transform command does the actual transform. We need a jenkins job to run transform on the merged Monarch KGX file. This loads Monarch in to neo4J and produces the Neo4J data dump for deploying to Neo4J downstream. Will need to write this to the monarch-ingest bucket under a specific version number.

We can refactor the graph-db-deployer that Faisal already created for this https://github.com/monarch-initiative/graphdb-deployer

glass-ships commented 2 years ago

https://github.com/monarch-initiative/graphdb-deployer

does this repo still exist? I'm getting a 404

kevinschaper commented 2 years ago

It might not, I think we're deviating a bit from that process, since it was more ansible driven and we're kind of splitting up the problem and just making the tar.gz of the data directory but not actually deploying neo4j. (at least, not yet!)