monarch-initiative / monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza
https://monarchinitiative.org
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Merge updates #200

Closed kevinschaper closed 2 years ago

kevinschaper commented 2 years ago

Sorry, this branch is a lot.

The most "finished" part that this branch brings in is updates to the merge.yaml to include all of the ingests (3-4 hadn't yet been added) and to remove node kgx files that we're no longer creating.

This includes a Dockerfile, a Jenkinsfile to run all ingests and merge, and a Jenkinsfile to run the download cache.

The download cache Jenkinsfile is good, the ingest & merge Jenkinsfile isn't yet, but I'd like to get the merge fixes in.

Finally, there is some initial infrastructure & docs for the process to load into neo4j and save the data directory, but not yet a Jenkinsfile.