monarch-initiative / monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza
https://monarchinitiative.org
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add ncbi gene information ingest files #201

Closed victoriasoesanto closed 2 years ago

kevinschaper commented 2 years ago

This looks great! The one last thing is a download.yaml entry to fetch the file

kevinschaper commented 2 years ago

We need to add species filtering to this still - in the source config yaml, it should look something like

filters: 
  - inclusion: 'include'
    column: 'taxon_id_column'
    filter_code: 'in' 
    value: 
      - '1234'
      - '5678'

(hopefully we put the actual taxon list in the issue)