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monarch-initiative / monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza
https://monarchinitiative.org
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node & edge files should be at top of monarch-kg.tar.gz #237

Closed kevinschaper closed 2 years ago

kevinschaper commented 2 years ago

In our existing pipeline/cli code, the tar command putting the node & edge files inside of output/merged/ subdirectory, but they should be at the top level in the tar file.

I'm not sure if cat-merge has this same bug, but it might be sensible to fix it within this repo, just to be sure we don't make any more funky tar files.

glass-ships commented 2 years ago

Resolved in PR which introduced CLI methods