monarch-initiative / monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza
https://monarchinitiative.org
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Issue 182 dictybase gene2 phenotype ingest #250

Closed RichardBruskiewich closed 2 years ago

RichardBruskiewich commented 2 years ago

AS of commit https://github.com/monarch-initiative/monarch-ingest/pull/250/commits/01edd80a5684b044dc6b918809cb7963f1853016, this PR is ready for "ETL Pipeline" level testing.

Note that this first full iteration of the ingest does not attempt to document the Strain used to link gene with phenotype. Sierra and I discussed this element and decided that a Biolink Model iteration with respect to modelling biological material genotypes (i.e. strains, populations, etc.), may be in order (see https://github.com/biolink/biolink-model/issues/1003).