Get Xenbase Gene nodes & Expression edges from Alliance

monarch-initiative / monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza

https://monarchinitiative.org

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Closed kevinschaper closed 2 years ago

kevinschaper commented 2 years ago

[x] Remove Xenbase gpi from download.yaml
[x] Add https://fms.alliancegenome.org/download/BGI_XB.json.gz to download.yaml
[x] Add https://fms.alliancegenome.org/download/EXPRESSION_XB.json.gz to download.yaml
[ ] Remove ingests/xenbase/gene.yaml & ingests/xenbase/gene.py
[ ] Add the BGI_XB file to ingests/alliance/gene.yaml
[ ] Add the EXPRESSION_XB file to ingests/alliance/gene_to_expression.yaml