monarch-initiative / monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza
https://monarchinitiative.org
14 stars 1 forks source link

Add mondo mapping #289

Closed kevinschaper closed 2 years ago

kevinschaper commented 2 years ago

This required an update to cat-merge to support applying multiple mapping files (which just went in ✅), so now we need to add this url to the download.yaml (marking it as being for the mapping/merge)

wget https://raw.githubusercontent.com/monarch-initiative/mondo/master/src/ontology/mappings/mondo.sssom.tsv

Then it needs to go into the ingest pipeline code as well.