Upgrade of the Monarch (ingest) Graph to Biolink Model 3.0 - Githubissues

monarch-initiative / monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza

https://monarchinitiative.org

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Upgrade of the Monarch (ingest) Graph to Biolink Model 3.0 #317

Closed RichardBruskiewich closed 1 year ago

RichardBruskiewich commented 2 years ago

For some practical reasons (e.g. PR https://github.com/monarch-initiative/monarch-ingest/pull/307), we soon need to consider upgrading (fixing then rerunning) the Monarch Ingests with the pending Biolink Model 3:

[ ] Update the project pyproject.toml to biolink-model 3.0.0 (or more likely, the 'latest' major.patch version)
[ ] Validate (and possibly update) the current unit tests against the new model
[ ] Rerun the ingest pipeline
[ ] Re-release the SRI Reference Graph from the new graph