monarch-initiative / monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza
https://monarchinitiative.org
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Investigate lack of causal predicates in omim_gene_to_disease #334

Closed kevinschaper closed 1 year ago

kevinschaper commented 2 years ago

The only predicates that we're currently producing in the OMIM g2d ingest are biolink:gene_associated_with_condition and biolink:risk_affected_by - but we expect to have biolink:causes also.

sabrinatoro commented 1 year ago

I don't think we would expect "causes", as we had discussions about the fact that a gene does not cause a disease, and therefore we don't want to use this relation. So I think the current predicates are ok.

kevinschaper commented 1 year ago

Thanks @sabrinatoro!