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monarch-initiative / monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza
https://monarchinitiative.org
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Implement --force in other calls #337

Closed glass-ships closed 1 year ago

glass-ships commented 2 years ago

--force flag is currently passed on to most methods in ingest, but only used by ingest transform.

we should make use of it in transform_phenio() as well as anything else, so that we can force overwriting output when it already exists (mostly useful for debugging / updating)