Temporary fix for goa failure due to file order

monarch-initiative / monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza

https://monarchinitiative.org

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Temporary fix for goa failure due to file order #371

Closed glass-ships closed 2 years ago

glass-ships commented 2 years ago

also updates cat-merge and python versions for consistency
slight edit to logging format for consistency with koza

glass-ships commented 2 years ago

This technically fails in loop mode, but that's more Koza's fault than the ingest's. That's something I'm working on, as well as a multifile test in Koza to determine why the file-order is so important here