monarch-initiative / monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza
https://monarchinitiative.org
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Add full category closure to category field in jsonl and neo4j artifacts #463

Closed kevinschaper closed 1 year ago

kevinschaper commented 1 year ago

For Translator, we need a jsonl version with the full category closure expansion, and this is something that neo4j should have as well.

I can see an argument for including this in addition to a version that only has the leaf-iest category, but to start with I think we should add the category expansion to the jsonl version, and then load that one into neo4j.

I like the idea of putting this functionality into kgx, but I want to make sure that it's the category expansion that matches the biolink version in the project, rather than getting our biolink version based on our bmt version.