This PR adds a script to download the output of modular ingests from their releases
(listed in a dictionary with the format "ingest-name": ["output_file_nodes", "output_file_edges"] as applies to your ingest)'
As well as a step in the ingest-all Jenkinsfile to run this script right before the merge step.
A test run of this updated Jenkins job can be found here
(Note: this run failed because some modular ingests still have original_object as a column in their output, which causes cat-merge to fail)
@kevinschaper we should probably get @amc-corey-cox @madanucd and @AO33 access to Jenkins at some point.
Important Notes:
ncbi-gene and alliance-variant-allele-ingest are currently commented out until we're sure they're ready to be included
After merging this PR, we should re-point the Jenkins job to */main rather than this branch.
This PR adds a script to download the output of modular ingests from their releases (listed in a dictionary with the format
"ingest-name": ["output_file_nodes", "output_file_edges"]
as applies to your ingest)'As well as a step in the
ingest-all
Jenkinsfile to run this script right before the merge step.A test run of this updated Jenkins job can be found here (Note: this run failed because some modular ingests still have
original_object
as a column in their output, which causescat-merge
to fail)@kevinschaper we should probably get @amc-corey-cox @madanucd and @AO33 access to Jenkins at some point.
Important Notes:
ncbi-gene
andalliance-variant-allele-ingest
are currently commented out until we're sure they're ready to be included*/main
rather than this branch.