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monarch-initiative / monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza
https://monarchinitiative.org
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Panther Ingest #77

Closed putmantime closed 1 year ago

putmantime commented 3 years ago

The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System was designed to classify proteins (and their genes) according to evolutionary family/subfamily, molecular function, biological process, and pathway. The PANTHER Classifications are the result of human curation as well as sophisticated bioinformatics algorithms

How do we use it? We currently utilize the 12 RefGenome species, as well as HUGO HCOP species, to seed the orthology calls. Species currently include: arabidopsis, budding yeast, chicken, chimp, dog, fission yeast, fruitfly, green lizard, horse, human, macaque, mouse, opossum, pig, platypus, rat, slime mold, worms, zebrafish. We use the orthology calls to populate the orthologs tabs for genes, as well as to infer disease-model associations via homology. Download RDF

Ingested files: ftp://ftp.pantherdb.org/ortholog/current_release/RefGenomeOrthologs.tar.gz ftp://ftp.pantherdb.org/ortholog/current_release/Orthologs_HCOP.tar.gz retrieved on 2021-03-10 ftp://ftp.pantherdb.org/ortholog/ Monarch Ingest Date: 2021-03-10 License information from the (Re)usable Data Project

putmantime commented 1 year ago

Archived as already implemented.