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monarch-initiative / monarch-legacy

Monarch web application and API
BSD 3-Clause "New" or "Revised" License
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can't see traits as phenotypes #1042

Open nlwashington opened 9 years ago

nlwashington commented 9 years ago

None of the associations between genes/variants/etc and traits show up in the various pages/tabs. This is generally a problem with the ontology not knowing how to bridge traits with UPheno. See ticket https://github.com/obophenotype/upheno/issues/150.

For example, this feature: http://localhost:8080/variant/dbSNP:rs109617015 should indicate that it is related to the trait AnimalQTLTrait:1425 == VT:0010261

this gene http://localhost:8080/gene/NCBIGene:100033832 should be linked to the AQTLTrait:5071 (racing distance, no VT equivalents) and additionally should be linked to it via the qtl AQTL:32133 (via RO:0002607)

this QTL: http://localhost:8080/variant/AQTL:31023 that is in this gene: http://localhost:8080/gene/NCBIGene:282305 is related to AQTLTrait:1045 == VT:0015043 (305-day milk yield).

mellybelly commented 9 years ago

@cmungall can we get @balhoff to help?