Closed cmungall closed 10 years ago
Confirmation that the issue does not reside in the ontology:
No Encephalitis or CNS inflammation to be found
Ontoquest is also returning sane descendants:
http://nif-services-stage.neuinfo.org//ontoquest-lamhdi/rel/parents/HP_0010788?level=5
This issue is upstream of the monarch API - the federation query below is wrong:
HP:0010788 = testicular neoplasm
"result": [
{
"Disorder": "<a class=\"external\" target=\"_blank\" href=\"http://www.omim.org/entry/109650\">Behcet Syndrome</a>",
"Qualifier": "",
"Phenotype": "<a class=\"external\" target=\"_blank\" href=\"http://www.human-phenotype-ontology.org/hpoweb/showterm?id=HP:0002383\">Encephalitis</a>",
"Aspect": "organ abnormality",
"Publication": "ORPHANET:117",
"Evidence Code": "TAS Traceable Author Statement",
"Onset": "",
"Frequency": "occasional",
"disorder_id": "OMIM:109650",
"e_uid": "653c174e6762af6517a759c60e4ec0051ef5f3b151b9771d6b7949283cd61554",
"disorder_database_prefix": "OMIM",
"disorder_id_num": "109650",
"disorder_name": "Behcet Syndrome",
"disorder_qualifier": "",
"phenotype_id": "HP:0002383",
"phenotype_label": "Encephalitis",
"publication_id": "ORPHANET:117",
"evidence_code": "TAS",
"onset": "",
"frequency": "occasional",
"aspect": "O",
"synonyms": "BEHÇET DISEASE|http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=117",
"aspect_text": "organ abnormality"
},
Issue with closure, filed under closure ticket:
https://support.crbs.ucsd.edu/browse/LAMHDI-140
This is a showstopper methinks
Can't test until data issues are resolved with identifier queries: https://support.crbs.ucsd.edu/browse/NIF-10234
This looks fixed - is it?
http://tartini.crbs.ucsd.edu/phenotype/HP_0010788
wrong:
and wrong: