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monarch-initiative / monarch-legacy

Monarch web application and API
BSD 3-Clause "New" or "Revised" License
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Add ability to filter phenotypes by anatomical category #1169

Open mellybelly opened 8 years ago

mellybelly commented 8 years ago

When looking at a disease page with very many phenotypes, it might be nice to see an overview of their distribution in different anatomical categories and/or be able to filter on these.

harryhoch commented 8 years ago

+1

jmcmurry commented 8 years ago

@cmungall could you comment on the degree of difficulty here?

cmungall commented 8 years ago

the anatomical categories are mirrored in upper level phenotype classes. So working with a slim of HPO etc would probably work here.

Analogous to https://github.com/geneontology/amigo/issues/308

(there should probably be a generic golr ticket for this: having a slim for any closure)

jmcmurry commented 8 years ago

as https://github.com/geneontology/amigo/issues/308 is now closed, does it make this issue more tractable for Monarch?

kltm commented 8 years ago

For the GO, with the addition of marked ontologies, we where able to load the slimmed versions for filtering. I'm not sure there is much change on the Monarch side of the fence as you have a different load infrastructure. However, once done, the addition is trivial to expose.